Understanding the protein concentration from A280 calculator — concept and principle
Measuring absorbance at 280 nm is the quickest way to find the concentration of a purified protein: it needs no reagents and the sample can be recovered. This calculator applies the Beer-Lambert law to an A280 reading, using the protein's molar extinction coefficient and molecular weight, and returns the concentration in mg/mL and µM. The defaults are for bovine serum albumin (BSA).
How it is calculated
- Molar concentration: c (M) = A ÷ (ε × l).
- µM: c × 10⁶.
- mg/mL: c × MW, because mol/L × g/mol = g/L, and 1 g/L = 1 mg/mL.
A280 is dimensionless, ε is in M⁻¹cm⁻¹, l is the light path in cm (1 cm for a standard cuvette), and MW is in Da (g/mol).
The principle
The Beer-Lambert law states that absorbance is proportional to the concentration of the absorbing species and to the distance light travels through it: A = εcl. At 280 nm, almost all protein absorbance comes from the aromatic side chains of tryptophan and tyrosine, with a small contribution from disulfide bonds. Each protein therefore has its own ε, which can be measured or predicted from the amino-acid sequence. Rearranging the law gives c = A ÷ (εl).
Worked example
- Inputs: A280 = 0.8, ε = 43,824 M⁻¹cm⁻¹, MW = 66,430 Da, l = 1 cm.
- c = 0.8 ÷ (43,824 × 1) = 1.8255 × 10⁻⁵ M = 18.25 µM.
- Mass concentration: 1.8255 × 10⁻⁵ mol/L × 66,430 g/mol = 1.2127 g/L = 1.213 mg/mL.
| Extinction coefficient (M⁻¹cm⁻¹) | Concentration (mg/mL) |
|---|---|
| 10,956 | 4.850675429 |
| 21,912 | 2.425337714 |
| 32,868 | 1.61689181 |
| 43,824 | 1.212668857 |
| 54,780 | 0.9701350858 |
| 65,736 | 0.8084459048 |
| 87,648 | 0.6063344286 |
How to read the result
ε ÷ MW gives the absorbance of a 1 mg/mL solution; for these BSA values it is about 0.66, so an A280 of 0.8 corresponds to about 1.2 mg/mL. Proteins rich in tryptophan have much higher values. Readings in the middle of the instrument's range are the most reliable; dilute samples that read too high and use a shorter path for concentrated ones. The A260/A280 ratio helps detect nucleic-acid contamination, which absorbs strongly at 260 nm and inflates A280.
Common mistakes
- Forgetting to blank the instrument with the same buffer the protein is in.
- Using ε for the reduced protein when disulfides are formed, or the reverse.
- Measuring cloudy samples; light scattering raises apparent absorbance.
- Forgetting the dilution factor when the sample was diluted before reading.
Frequently asked questions
Where do I get the extinction coefficient?
Calculate it from the sequence using the Pace method or a tool such as ExPASy ProtParam, or use a published experimental value.
What is "A280 0.1%"?
The absorbance of a 1 mg/mL (0.1% w/v) solution in a 1 cm path, equal to ε ÷ MW.
Can I use this for a protein mixture or cell lysate?
Not reliably, because the mixture has no single ε. Use a Bradford or BCA assay instead.
Sources: C. N. Pace, F. Vajdos, L. Fee, G. Grimsley and T. Gray, Protein Science 4, 2411–2423 (1995) · E. Gasteiger et al., "Protein identification and analysis tools on the ExPASy server", The Proteomics Protocols Handbook, Humana Press (2005)